Two decades of Martini: Better beads, broader scope

نویسندگان

چکیده

The Martini model, a coarse-grained force field for molecular dynamics simulations, has been around nearly two decades. Originally developed lipid-based systems by the groups of Marrink and Tieleman, model over years extended as community effort to current level general-purpose field. Apart from obvious benefit reduction in computational cost, popularity is largely due systematic yet intuitive building-block approach that underlies well open nature development its continuous validation. easy implementation widely used Gromacs software suite also instrumental. Since conception 2002, underwent gradual refinement bead interactions widening scope applications. In this review, we look back at development, culminating with release 3 version 2021. power illustrated key examples recent important findings biological material sciences enabled Martini, areas where resolution essential, namely high-throughput applications, large complexity, simulations approaching scale whole cells. This article categorized under: Software > Molecular Modeling Statistical Mechanics Dynamics Monte-Carlo Methods Structure Mechanism Computational Materials Science Biochemistry Biophysics

برای دانلود باید عضویت طلایی داشته باشید

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

منابع مشابه

Two decades of nutrition assessment in the eastern Mediterranean region: scope, methodologies and dissemination.

Different nutritional disorders prevail at different stages in the life cycle, e.g. growth retardation in the fetus, protein energy deficiency in children, noncommunicable conditions in adults. The scope of nutrition assessment has changed over the past 2 decades. The focus shifted from pregnant and lactating mothers and children, through functional consequences of malnutrition to deficiency di...

متن کامل

Isfahan University of Medical Sciences: Two Decades of Scientific Achievements

Introduction: Several studies indicate a significant growth in research activities and scientific achievements in Iran during recent years. Isfahan University of Medical Sciences as a main university has had a special situation in this regard. The aim of this study was to determine science productions of Isfahan University of Medical Sciences since its establishment, during1985 till 2007. Meth...

متن کامل

Two decades of imipenem therapy.

Imipenem, the first carbapenem discovered, was developed more than two decades ago in response to an unmet need for a highly potent, broad-spectrum antimicrobial agent with a strong safety profile. It has since been used to treat more than 26 million patients. In an era where antibiotic use has driven antibiotic resistance, choosing appropriate initial therapy for serious infection is critical....

متن کامل

Two decades of palliative care.

Western anthropology, based on the belief of dualism of body and mind, has unconsciously but profoundly influenced the basic approach to medicine for centuries. This separation of body and mind has become greater since the day of Decartes. Medical care has thus focused more on disease than illness, pain rather than suffering. New medical technologies bring new hopes of cure, but fail to allevia...

متن کامل

Two decades of circadian time.

Circadian rhythms coordinate our physiology at a fundamental level. Over the last 20 years, we have witnessed a paradigm shift in our perception of what the clocks driving such rhythms actually are, moving from 'black boxes' to talking about autoregulatory transcriptional/post-translational feedback loops with identified molecular components. We also now know that the pacemaker of the suprachia...

متن کامل

ذخیره در منابع من


  با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید

ژورنال

عنوان ژورنال: Wiley Interdisciplinary Reviews: Computational Molecular Science

سال: 2022

ISSN: ['1759-0884', '1759-0876']

DOI: https://doi.org/10.1002/wcms.1620